Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
- George Armstrong
- Kalen Cantrell
- et al.
- 2021
- Genome Research
Publications
171 results for Laxmi Parida
Parallel genomic alterations of antigen and payload targets mediate polyclonal acquired clinical resistance to sacituzumab govitecan in triple-negative breast cancer
- James T. Coates
- Sheng Sun
- et al.
- 2021
- Cancer Discovery
Longitudinal single-cell dynamics of chromatin accessibility and mitochondrial mutations in chronic lymphocytic leukemia mirror disease history
- Livius Penter
- Satyen H. Gohil
- et al.
- 2021
- Cancer Discovery
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
- Clarisse Marotz
- Pedro Belda-Ferre
- et al.
- 2021
- Microbiome
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data
- Lingjing Jiang
- Niina Haiminen
- et al.
- 2021
- Biometrics
Challenges in benchmarking metagenomic profilers
- Zheng Sun
- Shi Huang
- et al.
- 2021
- Nature Methods
Multiple loci selection with multi-way Epistasis in coalescence with recombination
- Aritra Bose
- Filippo Utro
- et al.
- 2021
- Algorithms
Functional profiling of COVID-19 respiratory tract microbiomes
- Niina Haiminen
- Filippo Utro
- et al.
- 2021
- Scientific Reports
Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets
- Kalen Cantrell
- Marcus W. Fedarko
- et al.
- 2021
- mSystems
Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences
- Anna Paola Carrieri
- Niina Haiminen
- et al.
- 2021
- Scientific Reports