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Molecular dynamics as a data source: scaling simulation for building AI modelsJoseph MorroneJeff Weberet al.2023ACS Fall 2023
Graph-based 3D Generative Small-Molecule Modeling Targeting for Multi Proteins with Enhanced Binding CompatibilitySeung Gu KangJeff Weberet al.2023ACS Fall 2023
Comparing active site sequence representations for kinase-ligand affinity predictionJannis BornTien Huynhet al.2022ACS Fall 2022
In-Pocket 3D Graphs Enhance Ligand-Target Compatibility in Generative Small-Molecule CreationSeung Gu KangJeff Weberet al.2022arXiv
Active site sequence representation of human kinases outperforms full sequence for affinity prediction and inhibitor generation: 3D effects in a 1D modelJannis BornTien Huynhet al.2022ACS Spring 2022
Active site sequence representation of human kinases outperforms full sequence for affinity predictionJannis BornTien Huynhet al.2021NeurIPS 2021