BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIESYoav Kan-TorMichael Morris Danzigeret al.2025ISMB 2025
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive MaskingMichael Morris DanzigerBharath Dandalaet al.2025ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample TestingNoa MorielMichael Morris Danzigeret al.2025ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025
Aligning Protein Conformation Ensemble Generation with Physical FeedbackJiarui LuXiaoyin Chenet al.2025ICML 2025
Learning interpretable positional encodings in transformers depends on initializationTaku ItoLuca Cocchiet al.2025ICML 2025
Aligning foundation models on encoded synthetic omic data for patient stratificationNikita JanakarajanAntonio Foncubiertaet al.2025ICDH 2025
Beyond the Clinic: Leveraging Speech Acoustics and Phonetics for Cognitive Monitoring in PKUKely NorelCarla Agurto Rioset al.2025ICDH 2025