BioVERSE: A Modular Framework for Integrating Biomedical Modalities with Language Models in Precision MedicineChing-Huei TsouMichal Ozery-Flatoet al.2025ISMB 2025
LEOPARD: Linking Experimental Observations with Predictive Algorithms to reveal Response Dynamics for the single cellVibha AnandAkira Kosekiet al.2025ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample TestingNoa MorielMichael Morris Danzigeret al.2025ISMB 2025
Harnessing biomedical foundation models for genomic feature engineering to investigate patient drug responseLaura GardinerStephen Checkleyet al.2025ISMB 2025
Designing a Multi-Agent AI Framework to Mine Scientific Literature and Experiment Datasets to Support and Enrich Single-Cell AnalysesJoao Bettencourt-SilvaNatasha Mulliganet al.2025ISMB 2025
Avoiding Leakage Poisoning: Concept Interventions Under Distribution ShiftsMateo Espinosa ZarlengaGabriele Dominiciet al.2025ICML 2025
Regress, Don't Guess: A Regression-like Loss on Number Tokens for Language ModelsJonas ZausingerLars Penniget al.2025ICML 2025
Symmetry-Driven Discovery of Dynamical Variables in Molecular SimulationsJeet MohapatraNima Dehmamyet al.2025ICML 2025