SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environmentClarisse MarotzPedro Belda-Ferreet al.2021Microbiome
Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data setsKalen CantrellMarcus W. Fedarkoet al.2021mSystems
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing TaxonomyQiyun ZhuShi Huanget al.2022mSystems
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomesGeorge ArmstrongKalen Cantrellet al.2021Genome Research