AutoXAI4Omics: an automated explainable AI tool for omics and tabular data
- James Strudwick
- Laura-Jayne Gardiner
- et al.
- 2024
- Briefings in Bioinformatics
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35 results for Niina Haiminen
Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production
- Kristen L. Beck
- Niina Haiminen
- et al.
- 2024
- mSystems
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
- Justin P. Shaffer
- Louis-Félix Nothias
- et al.
- 2022
- Nature Microbiology
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
- Qiyun Zhu
- Shi Huang
- et al.
- 2022
- mSystems
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
- George Armstrong
- Kalen Cantrell
- et al.
- 2021
- Genome Research
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
- Clarisse Marotz
- Pedro Belda-Ferre
- et al.
- 2021
- Microbiome
DNA extraction and host depletion methods significantly impact and potentially bias bacterial detection in a biological fluid
- Erika Ganda
- Kristen L. Beck
- et al.
- 2021
- mSystems
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data
- Lingjing Jiang
- Niina Haiminen
- et al.
- 2021
- Biometrics
Challenges in benchmarking metagenomic profilers
- Zheng Sun
- Shi Huang
- et al.
- 2021
- Nature Methods
Functional profiling of COVID-19 respiratory tract microbiomes
- Niina Haiminen
- Filippo Utro
- et al.
- 2021
- Scientific Reports