Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
- Justin P. Shaffer
- Louis-Félix Nothias
- et al.
- 2022
- Nature Microbiology
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11 results for Rob Knight
Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
- Qiyun Zhu
- Shi Huang
- et al.
- 2022
- mSystems
Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes
- George Armstrong
- Kalen Cantrell
- et al.
- 2021
- Genome Research
SARS-CoV-2 detection status associates with bacterial community composition in patients and the hospital environment
- Clarisse Marotz
- Pedro Belda-Ferre
- et al.
- 2021
- Microbiome
Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers
- Qiyun Zhu
- Qiangchuan Hou
- et al.
- 2021
- ISME Journal
Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data
- Lingjing Jiang
- Niina Haiminen
- et al.
- 2021
- Biometrics
Challenges in benchmarking metagenomic profilers
- Zheng Sun
- Shi Huang
- et al.
- 2021
- Nature Methods
Empress enables tree-guided, interactive, and exploratory analyses of multi-omic data sets
- Kalen Cantrell
- Marcus W. Fedarko
- et al.
- 2021
- mSystems
Human skin, oral, and gut microbiomes predict chronological age
- Shi Huang
- Niina Haiminen
- et al.
- 2020
- mSystems
Challenges in the construction of knowledge bases for human microbiome-disease associations
- Varsha D. Badal
- Dustin Wright
- et al.
- 2019
- Microbiome